Publications of Dr. Janina Oetjen

Articles (17)

1. A. Ardestani, S. Li, K. Annamalai, B. Lupse, S. Geravandi, A. Dobrowolski, S. Yu, S. Zhu, T. D. Baguley, M. Surakattula, J. Oetjen, L. Hauberg-Lotte, R. Herranz, S. Awal, D. Altenhofen, V. Nguyen-Tran, S. Joseph, P. G. Schultz, A. K. Chatterjee, N. Rogers, M. S. Tremblay, W. Shen, K. Maedler.
   Neratinib protects pancreatic beta cells in diabetes.
   Nature Communications, 10(5015), 2019.

   DOI: 10.1038/s41467-019-12880-5.
   online at: https://doi.org/10.1038/s41467-019-12880" target="doi">015 | https://doi.org/10.1038/s41467-019-12880

2. Y. Cordero Hernandez, T. Boskamp, R. Casadonte, L. Hauberg-Lotte, J. Oetjen, D. Lachmund, A. Peter, D. Trede, K. Kriegsmann, M. Kriegsmann, J. Kriegsmann, P. Maaß.
   Targeted Feature Extraction in MALDI Mass Spectrometry Imaging to Discriminate Proteomic Profiles of Breast and Ovarian Cancer.
   Proteomics - Clinical Applications, 1700168 , Wiley, 2018.

   DOI: 10.1002/prca.201700168

3. J. Nüße, M. Waespy, U. Mirastschijski, J. Oetjen, N. Brandes, O. Rebello, F. Paroni, S. Kelm, F. Dietz.
   Two new isoforms of the human hepatoma-derived growth factor interact with components of the cytoskeleton.
   Biological Cemistry, 397(5), 417–436 pp., 2016.

   DOI: 10.1515/hsz-2015-0273

4. T. Boskamp, D. Lachmund, J. Oetjen, Y. Hernandez-Cordero, D. Trede, P. Maaß, R. Casadonte, J. Kriegsmann, A. Warth, H. Dienemann, W. Weichert, M. Kriegsmann.
   A new classification method for MALDI imaging mass spectrometry data acquired on formalin-fixed paraffin-embedded tissue samples.
   BBA - Proteins and Proteomics, , 2016.

   DOI: 10.1016/j.bbapap.2016.11.003

5. J. Oetjen, D. Lachmund, A. Palmer, F. Alexandrov, M. Becker, T. Boskamp, P. Maaß.
   An approach to optimize sample preparation for MALDI imaging MS of FFPE sections using fractional factorial design of experiments.
   Analytical and Bioanalytical Chemistry, 408(24):6729-40, 2016.

   DOI: 10.1007/s00216-016-9793-4

6. F. Hoffmann, J. M. Lotz, J. Lotz, S. Heldmann, D. Trede, J. Oetjen, M. Becker, G. Ernst, P. Maaß, F. Alexandrov, O. Guntinas-Lichius, H. Thiele, F. von Eggeling.
   Integration of 3D multimodal imaging data of a head and neck cancer and advanced feature recognition.
   BBA - Proteins and Proteomics, , 2016.

   DOI: 10.1016/j.bbapap.2016.08.018

7. J. Oetjen, K. Veselkov, J. Watrous, J. McKenzie, M. Becker, L. Hauberg-Lotte, J. H. Kobarg, A. K. Mróz, N. Strittmatter, F. Hoffmann, D. Trede, A. Palmer, S. Schiffler, K. Steinhorst, M. Aichler, R. Goldin, O. Guntinas-Lichius, F. von Eggeling, H. Thiele, K. Mädler, A. Walch, P. Maaß, P. C. Dorrestein, Z. Takats, F. Alexandrov.
   Benchmark datasets for 3D MALDI- and DESI-imaging mass spectrometry.
   GigaScience, 4, 2015.

   DOI: 10.1186/s13742-015-0059-4

8. C. Song, M. Mazzola, X. Cheng, J. Oetjen, F. Alexandrov, P. C. Dorrestein, J. Watrous, M. van der Voort, J. M. Raaijmakers.
   Molecular and chemical dialogues in bacteria-protozoa interactions.
   Scientific Reports, Article ID 12837 5, 2015.

   DOI: 10.1038/srep12837

9. H. Thiele, S. Heldmann, D. Trede, J. Strehlow, S. Wirtz, W. Dreher, J. Berger, J. Oetjen, J. H. Kobarg, B. Fischer, P. Maaß.
   2D and 3D MALDI-Imaging: Conceptual Strategies for Visualization and Data Mining.
   BBA - Proteins and Proteomics, 1844(1):117-137, 2014.

   DOI: 10.1016/j.bbapap.2013.01.040

10. O. Klein, K. Strohschein, G. Nebrich, J. Oetjen, D. Trede, H. Thiele, F. Alexandrov, P. Giavalisco, G. N. Duda, P. Roth von, S. Geissler, J. Klose, T. Winkler.
    MALDI imaging mass spectrometry: Discrimination of pathophysiological regions in traumatized skeletal muscle by characteristic peptide signatures.
    Proteomics, 14(20):2249-2260, 2014.

    DOI: 10.1002/pmic.201400088

11. J. H. Kobarg, P. Maaß, J. Oetjen, O. Tropp, E. Hirsch, C. Sagiv, M. Goldabaee, P. Vandergheynst.
    Numerical experiments with MALDI Imaging data.
    Advances in Computational Mathematics, 40(3):667-682, 2014.

    DOI: 10.1007/s10444-013-9325-0

12. R. M. M. Abed, L. Polerecky, A. Al-Habsi, J. Oetjen, M. Strous, D. de Beer.
    Rapid Recovery of Cyanobacterial Pigments in Desiccated Biological Soil Crusts following Addition of Water.
    PLoS ONE, , 2014.

    DOI: 10.1371/journal.pone.0112372

13. J. Oetjen, M. Aichler, D. Trede, J. Strehlow, J. Berger, S. Heldmann, M. Becker, M. Gottschalk, J. H. Kobarg, S. Wirtz, S. Schiffler, H. Thiele, A. Walch, P. Maaß, F. Alexandrov.
    MRI-compatible pipeline for three-dimensional MALDI imaging mass spectrometry using PAXgene fixation .
    Journal of Proteomics, 90:52-60, 2013.

    DOI: 10.1016/j.jprot.2013.03.013

14. D. Trede, S. Schiffler, M. Becker, S. Wirtz, K. Steinhorst, J. Strehlow, M. Aichler, J. H. Kobarg, J. Oetjen, A. Dyatlov, S. Heldmann, A. Walch, H. Thiele, P. Maaß, F. Alexandrov.
    Exploring Three-Dimensional Matrix-Assisted Laser Desorption/Ionization Imaging Mass Spectrometry Data: Three-Dimensional Spatial Segmentation of Mouse Kidney.
    Analytical Chemistry, 84(14):6079-6087, 2012.

    DOI: 10.1021/ac300673y

15. D. Trede, J. H. Kobarg, J. Oetjen, H. Thiele, P. Maaß, F. Alexandrov.
    On the Importance of Mathematical Methods for Analysis of MALDI-Imaging Mass Spectrometry Data.
    Journal of Integrative Bioinformatics, 9(1), 189 pp., 2012.

    DOI: 10.2390/biecoll-jib-2012-189
    online at: JIB open access

16. J. Oetjen, B. Reinhold-Hurek.
    Characterization of the DraT/DraG System for Posttranslational Regulation of Nitrogenase in the Endophytic Betaproteobacterium Azoarcus sp. Strain BH72.
    Journal of Bacteriology, 191(11):3726-3735, 2009.

    DOI: 10.1128/JB.01720-08

17. J. Oetjen, S. Rexroth, B. Reinhold-Hurek.
    Mass spectrometric characterization of the covalent modification of the nitrogenase Fe-protein in Azoarcus sp. BH72.
    The FEBS Journal, 276(13):3618-3627, 2009.

    DOI: 10.1111/j.1742-4658.2009.07081.x

Proceedings (1)

1. T. Boskamp, D. Lachmund, J. Oetjen, Y. Hernandez-Cordero, J. Behrmann, J. H. Kobarg, R. Casadonte, J. Kriegsmann, P. Maaß.
   Visualizing MALDI TOF datasets of FFPE tissue samples for the purpose of quality assessment and comparison.
   OurCon IV - 2016, 17.10.-21.10.2016, Ustron, Poland.
   

   online at: http://www.bioradint.eu/ourcon_public/papersview.php?showdetail=&paper_id=45