% This file was created by ZeTeM Website
 
% Janina Oetjen







@ARTICLE{Ardestani2019_0035c,
  author = {Amin Ardestani and Sijia Li and Karthika Annamalai and Blaz Lupse and Shirin Geravandi and Aleksandra Dobrowolski and Shan Yu and Siying Zhu and Tyler D. Baguley and Murali Surakattula and Janina Oetjen and Lena Hauberg-Lotte and Raquel Herranz and Sushil Awal and Delsi Altenhofen and Van Nguyen-Tran and Sean Joseph and Peter G. Schultz and Arnab K. Chatterjee and Nikki Rogers and Matthew S. Tremblay and Weijun Shen and Kathrin Maedler},
  title = {Neratinib protects pancreatic beta cells in diabetes},
  journal = {Nature Communications},
  volume = {10},
  number = {5015},
  year = {2019},
  doi = {10.1038/s41467-019-12880-5.}
}


@ARTICLE{CorderoHernandez2018_28ab2,
  author = {Yovany Cordero Hernandez and Tobias Boskamp and Rita Casadonte and Lena Hauberg-Lotte and Janina Oetjen and Delf Lachmund and Annette Peter and Dennis Trede and Katharina Kriegsmann and Mark Kriegsmann and Jörg Kriegsmann and Peter Maaß},
  title = {Targeted Feature Extraction in MALDI Mass Spectrometry Imaging to Discriminate Proteomic Profiles of Breast and Ovarian Cancer},
  journal = {Proteomics - Clinical Applications},
  annote = {1700168},
  publisher = {Wiley},
  year = {2018},
  doi = {10.1002/prca.201700168}
}


@ARTICLE{Nuesse2016_47589,
  author = {Jessica Nüße and Mario Waespy and Ursula Mirastschijski and Janina Oetjen and Nadine Brandes and Osmond Rebello and Federico Paroni and Sorge Kelm and Frank Dietz},
  title = { Two new isoforms of the human hepatoma-derived growth factor interact with components of the cytoskeleton},
  journal = {Biological Cemistry},
  volume = {397},
  number = {5},
  pages = {417–436},
  year = {2016},
  doi = {10.1515/hsz-2015-0273}
}


@ARTICLE{Boskamp2016_cf0fc,
  author = {Tobias Boskamp and Delf Lachmund and Janina Oetjen and Yovany Hernandez-Cordero and Dennis Trede and Peter Maaß and Rita Casadonte and Jörg Kriegsmann and Arne Warth and Hendrik Dienemann and Wilko Weichert and Mark Kriegsmann},
  title = {A new classification method for MALDI imaging mass spectrometry data acquired on formalin-fixed paraffin-embedded tissue samples},
  journal = {BBA - Proteins and Proteomics},
  year = {2016},
  doi = {10.1016/j.bbapap.2016.11.003}
}


@ARTICLE{Oetjen2016_9e620,
  author = {Janina Oetjen and Delf Lachmund and Andrew Palmer and Fedor Alexandrov and Michael Becker and Tobias Boskamp and Peter Maaß},
  title = {An approach to optimize sample preparation for MALDI imaging MS of FFPE sections using fractional factorial design of experiments.},
  journal = {Analytical and Bioanalytical Chemistry},
  volume = {408},
  number = {24},
  pages = {6729-40},
  year = {2016},
  doi = {10.1007/s00216-016-9793-4}
}


@ARTICLE{Hoffmann2016_f4a5a,
  author = {Franziska Hoffmann and Judith M. Lotz and Johannes Lotz and Stefan Heldmann and Dennis Trede and Janina Oetjen and Michael Becker and Günther Ernst and Peter Maaß and Fedor Alexandrov and Orlando Guntinas-Lichius and Herbert Thiele and Ferdinand von Eggeling},
  title = {Integration of 3D multimodal imaging data of a head and neck cancer and advanced feature recognition},
  journal = {BBA - Proteins and Proteomics},
  year = {2016},
  doi = {10.1016/j.bbapap.2016.08.018}
}


@ARTICLE{Oetjen2015_84bd2,
  author = {Janina Oetjen and Kirill Veselkov and J. Watrous and James McKenzie and Michael Becker and Lena Hauberg-Lotte and Jan Hendrik Kobarg and Anna K Mróz and Nicole Strittmatter and Franziska Hoffmann and Dennis Trede and Andrew Palmer and Stefan Schiffler and Klaus Steinhorst and Michaela Aichler and Robert Goldin and Orlando Guntinas-Lichius and Ferdinand von Eggeling and Herbert Thiele and Kathrin Mädler and Axel Walch and Peter Maaß and P. C. Dorrestein and Zoltan Takats and Fedor Alexandrov},
  title = {Benchmark datasets for 3D MALDI- and DESI-imaging mass spectrometry},
  journal = {GigaScience},
  volume = {4},
  year = {2015},
  doi = {10.1186/s13742-015-0059-4}
}


@ARTICLE{Song2015_2a33c,
  author = {Chunxu Song and Mark Mazzola and Xu Cheng and Janina Oetjen and Fedor Alexandrov and P. C. Dorrestein and J. Watrous and Menno van der Voort and Jos M. Raaijmakers},
  title = {Molecular and chemical dialogues in bacteria-protozoa interactions},
  journal = {Scientific Reports},
  annote = {Article ID 12837},
  volume = {5},
  year = {2015},
  doi = {10.1038/srep12837}
}


@ARTICLE{Thiele2014_aa7f9,
  author = {Herbert Thiele and Stefan Heldmann and Dennis Trede and Jan Strehlow and Stefan Wirtz and Wolfgang Dreher and Judith Berger and Janina Oetjen and Jan Hendrik Kobarg and Bernd Fischer and Peter Maaß},
  title = {2D and 3D MALDI-Imaging: Conceptual Strategies for Visualization and Data Mining},
  journal = {BBA - Proteins and Proteomics},
  volume = {1844},
  number = {1},
  pages = {117-137},
  year = {2014},
  doi = {10.1016/j.bbapap.2013.01.040}
}


@ARTICLE{Klein2014_6beb4,
  author = {Oliver Klein and Kristin Strohschein and Grit Nebrich and Janina Oetjen and Dennis Trede and Herbert Thiele and Fedor Alexandrov and Patrick Giavalisco and Georg N. Duda and Philipp Roth von and Sven Geissler and Joachim Klose and Tobias Winkler},
  title = {MALDI imaging mass spectrometry: Discrimination of pathophysiological regions in traumatized skeletal muscle by characteristic peptide signatures},
  journal = {Proteomics},
  volume = {14},
  number = {20},
  pages = {2249-2260},
  year = {2014},
  doi = {10.1002/pmic.201400088}
}


@ARTICLE{Kobarg2014_0491d,
  author = {Jan Hendrik Kobarg and Peter Maaß and Janina Oetjen and Oren Tropp and Eyal Hirsch and C. Sagiv and Mohammad Goldabaee and Pierre Vandergheynst},
  title = {Numerical experiments with MALDI Imaging data},
  journal = {Advances in Computational Mathematics},
  volume = {40},
  number = {3},
  pages = {667-682},
  year = {2014},
  doi = {10.1007/s10444-013-9325-0}
}


@ARTICLE{Abed2014_f1e0c,
  author = {Raeid M. M. Abed and Lubos Polerecky and Amal Al-Habsi and Janina Oetjen and Marc Strous and Dirk de Beer},
  title = {Rapid Recovery of Cyanobacterial Pigments in Desiccated Biological Soil Crusts following Addition of Water},
  journal = {PLoS ONE},
  year = {2014},
  doi = {    10.1371/journal.pone.0112372}
}


@ARTICLE{Oetjen2013_a318f,
  author = {Janina Oetjen and Michaela Aichler and Dennis Trede and Jan Strehlow and Judith Berger and Stefan Heldmann and Michael Becker and Michael Gottschalk and Jan Hendrik Kobarg and Stefan Wirtz and Stefan Schiffler and Herbert Thiele and Axel Walch and Peter Maaß and Fedor Alexandrov},
  title = {MRI-compatible pipeline for three-dimensional MALDI imaging mass spectrometry using PAXgene fixation },
  journal = {Journal of Proteomics},
  volume = {90},
  pages = {52-60},
  year = {2013},
  doi = {10.1016/j.jprot.2013.03.013}
}


@ARTICLE{Trede2012_bc30b,
  author = {Dennis Trede and Stefan Schiffler and Michael Becker and Stefan Wirtz and Klaus Steinhorst and Jan Strehlow and Michaela Aichler and Jan Hendrik Kobarg and Janina Oetjen and Andrey Dyatlov and Stefan Heldmann and Axel Walch and Herbert Thiele and Peter Maaß and Fedor Alexandrov},
  title = {Exploring Three-Dimensional Matrix-Assisted Laser Desorption/Ionization Imaging Mass Spectrometry Data: Three-Dimensional Spatial Segmentation of Mouse Kidney},
  journal = {Analytical Chemistry},
  volume = {84},
  number = {14},
  pages = {6079-6087},
  year = {2012},
  doi = {10.1021/ac300673y}
}


@ARTICLE{Trede2012_b5c57,
  author = {Dennis Trede and Jan Hendrik Kobarg and Janina Oetjen and Herbert Thiele and Peter Maaß and Fedor Alexandrov},
  title = {On the Importance of Mathematical Methods for Analysis of MALDI-Imaging Mass Spectrometry Data},
  journal = {Journal of Integrative Bioinformatics},
  volume = {9},
  number = {1},
  pages = {189},
  year = {2012},
  doi = {10.2390/biecoll-jib-2012-189}
}


@ARTICLE{Oetjen2009_e9e47,
  author = {Janina Oetjen and Barbara Reinhold-Hurek},
  title = {Characterization of the DraT/DraG System for Posttranslational Regulation of Nitrogenase in the Endophytic Betaproteobacterium Azoarcus sp. Strain BH72},
  journal = {Journal of Bacteriology},
  volume = {191},
  number = {11},
  pages = {3726-3735},
  year = {2009},
  doi = {10.1128/JB.01720-08 }
}


@ARTICLE{Oetjen2009_0e42a,
  author = {Janina Oetjen and Sascha Rexroth and Barbara Reinhold-Hurek},
  title = {Mass spectrometric characterization of the covalent modification of the nitrogenase Fe-protein in Azoarcus sp. BH72},
  journal = {The FEBS Journal},
  volume = {276},
  number = {13},
  pages = {3618-3627},
  year = {2009},
  doi = {10.1111/j.1742-4658.2009.07081.x}
}





@CONFERENCE{Boskamp2016_1be92,
  author = {Tobias Boskamp and Delf Lachmund and Janina Oetjen and Yovany Hernandez-Cordero and Jens Behrmann and Jan Hendrik Kobarg and Rita Casadonte and Jörg Kriegsmann and Peter Maaß},
  title = {Visualizing MALDI TOF datasets of FFPE tissue samples for the purpose of quality assessment and comparison},
  booktitle = {OurCon IV - 2016, 17.10.-21.10.2016, Ustron, Polen},
  year = {2016}
}