Publikationen von Dr. Jan Hendrik Kobarg

Buchkapitel (1)

1. J. H. Kobarg, F. Alexandrov.
   Efficient spatial segmentation of hyper-spectral 3D volume data.
   Algorithms from and for Nature and Life, B. Lausen, D. Van den Poel, A. Ultsch (Hrsg.), Studies in Classification, Data Analysis, and Knowledge Organization, S. 95-103, Springer Verlag, 2013.

   DOI: 10.1007/978-3-319-00035-0_9

Zeitschriftenartikel (10)

1. T. Boskamp, D. Lachmund, R. Casadonte, L. Hauberg-Lotte, J. H. Kobarg, J. Kriegsmann, P. Maaß.
   Using the chemical noise background in MALDI mass spectrometry imaging for mass alignment and calibration.
   Analytical Chemistry, 92(1):1301-1308, 2020.

   DOI: 10.1021/acs.analchem.9b04473
   online unter: https://doi.org/10.1021/acs.analchem.9b04473

2. S. Devaux, D. Cizkova, J. Quanico, J. Franck, S. Nataf, L. Pays, L. Hauberg-Lotte, P. Maaß, J. H. Kobarg, F. Kobeissy, C. Mériaux, M. Wisztorski, L. Slovinska, J. Blasko, V. Cigankova, I. Fournier, M. Salzet.
   Proteomic Analysis of the Spatio-temporal Based Molecular Kinetics of Acute Spinal Cord Injury Identifies a Time- and Segment-specific Window for Effectife Tissue Repair.
   Molecular & Cellular Proteomics, 15:2641-2670, 2016.

   DOI: 10.1074/mcp.M115.057794

3. J. Oetjen, K. Veselkov, J. Watrous, J. McKenzie, M. Becker, L. Hauberg-Lotte, J. H. Kobarg, A. K. Mróz, N. Strittmatter, F. Hoffmann, D. Trede, A. Palmer, S. Schiffler, K. Steinhorst, M. Aichler, R. Goldin, O. Guntinas-Lichius, F. von Eggeling, H. Thiele, K. Mädler, A. Walch, P. Maaß, P. C. Dorrestein, Z. Takats, F. Alexandrov.
   Benchmark datasets for 3D MALDI- and DESI-imaging mass spectrometry.
   GigaScience, 4, 2015.

   DOI: 10.1186/s13742-015-0059-4

4. H. Thiele, S. Heldmann, D. Trede, J. Strehlow, S. Wirtz, W. Dreher, J. Berger, J. Oetjen, J. H. Kobarg, B. Fischer, P. Maaß.
   2D and 3D MALDI-Imaging: Conceptual Strategies for Visualization and Data Mining.
   BBA - Proteins and Proteomics, 1844(1):117-137, 2014.

   DOI: 10.1016/j.bbapap.2013.01.040

5. J. H. Kobarg, P. Maaß, J. Oetjen, O. Tropp, E. Hirsch, C. Sagiv, M. Goldabaee, P. Vandergheynst.
   Numerical experiments with MALDI Imaging data.
   Advances in Computational Mathematics, 40(3):667-682, 2014.

   DOI: 10.1007/s10444-013-9325-0

6. J. Oetjen, M. Aichler, D. Trede, J. Strehlow, J. Berger, S. Heldmann, M. Becker, M. Gottschalk, J. H. Kobarg, S. Wirtz, S. Schiffler, H. Thiele, A. Walch, P. Maaß, F. Alexandrov.
   MRI-compatible pipeline for three-dimensional MALDI imaging mass spectrometry using PAXgene fixation .
   Journal of Proteomics, 90:52-60, 2013.

   DOI: 10.1016/j.jprot.2013.03.013

7. D. Trede, S. Schiffler, M. Becker, S. Wirtz, K. Steinhorst, J. Strehlow, M. Aichler, J. H. Kobarg, J. Oetjen, A. Dyatlov, S. Heldmann, A. Walch, H. Thiele, P. Maaß, F. Alexandrov.
   Exploring Three-Dimensional Matrix-Assisted Laser Desorption/Ionization Imaging Mass Spectrometry Data: Three-Dimensional Spatial Segmentation of Mouse Kidney.
   Analytical Chemistry, 84(14):6079-6087, 2012.

   DOI: 10.1021/ac300673y

8. D. Trede, J. H. Kobarg, J. Oetjen, H. Thiele, P. Maaß, F. Alexandrov.
   On the Importance of Mathematical Methods for Analysis of MALDI-Imaging Mass Spectrometry Data.
   Journal of Integrative Bioinformatics, 9(1), 189 S., 2012.

   DOI: 10.2390/biecoll-jib-2012-189
   online unter: JIB open access

9. F. Alexandrov, J. H. Kobarg.
   Efficient spatial segmentation of large imaging mass spectrometry datasets with spatially aware clustering.
   Bioinformatics, 27(13):i230-i238, 2011.

   DOI: 10.1093/bioinformatics/btr246

10. F. Alexandrov, S. Meding, D. Trede, J. H. Kobarg, B. Balluff, A. Walch, H. Thiele, P. Maaß.
    Super-resolution segmentation of imaging mass spectrometry data: Solving the issue of low lateral resolution.
    Journal of Proteomics, 75(1):237-245, Elsevier, 2011.

    DOI: 10.1016/j.jprot.2011.08.002

Qualifikationsarbeiten (1)

1. J. H. Kobarg.
   Signal and image processing methods for imaging mass spectrometry data.
   Dissertationsschrift, Universität Bremen, 2014.

   online unter: http://nbn-resolving.de/urn:nbn:de:gbv:46-00104098-10

Tagungsbeiträge (2)

1. T. Boskamp, D. Lachmund, J. Oetjen, Y. Hernandez-Cordero, J. Behrmann, J. H. Kobarg, R. Casadonte, J. Kriegsmann, P. Maaß.
   Visualizing MALDI TOF datasets of FFPE tissue samples for the purpose of quality assessment and comparison.
   OurCon IV - 2016, 17.10.-21.10.2016, Ustron, Polen.
   

   online unter: http://www.bioradint.eu/ourcon_public/papersview.php?showdetail=&paper_id=45

2. D. Trede, J. H. Kobarg, K. Steinhorst, F. Alexandrov.
   Mathematical Methods for Imaging Mass Spectrometry.
   14th Joint International IMEKO TC1+TC7+TC13 Symposium, 31.08.-02.09.2011, Jena, Deutschland.
   

   Best Paper Award at IMEKO Symposium Jena

   online unter: URN: urn:nbn:de:gbv:ilm1-2011imeko-082:8