Publikationen von Dr. Jan Hendrik Kobarg
Buchkapitel (1)
- J. H. Kobarg, F. Alexandrov.
Efficient spatial segmentation of hyper-spectral 3D volume data.
Algorithms from and for Nature and Life, B. Lausen, D. Van den Poel, A. Ultsch (Hrsg.), Studies in Classification, Data Analysis, and Knowledge Organization, S. 95-103, Springer Verlag, 2013.
Zeitschriftenartikel (10)
- T. Boskamp, D. Lachmund, R. Casadonte, L. Hauberg-Lotte, J. H. Kobarg, J. Kriegsmann, P. Maaß.
Using the chemical noise background in MALDI mass spectrometry imaging for mass alignment and calibration.
Analytical Chemistry, 92(1):1301-1308, 2020.DOI: 10.1021/acs.analchem.9b04473
online unter: https://doi.org/10.1021/acs.analchem.9b04473 - S. Devaux, D. Cizkova, J. Quanico, J. Franck, S. Nataf, L. Pays, L. Hauberg-Lotte, P. Maaß, J. H. Kobarg, F. Kobeissy, C. Mériaux, M. Wisztorski, L. Slovinska, J. Blasko, V. Cigankova, I. Fournier, M. Salzet.
Proteomic Analysis of the Spatio-temporal Based Molecular Kinetics of Acute Spinal Cord Injury Identifies a Time- and Segment-specific Window for Effectife Tissue Repair.
Molecular & Cellular Proteomics, 15:2641-2670, 2016. - J. Oetjen, K. Veselkov, J. Watrous, J. McKenzie, M. Becker, L. Hauberg-Lotte, J. H. Kobarg, A. K. Mróz, N. Strittmatter, F. Hoffmann, D. Trede, A. Palmer, S. Schiffler, K. Steinhorst, M. Aichler, R. Goldin, O. Guntinas-Lichius, F. von Eggeling, H. Thiele, K. Mädler, A. Walch, P. Maaß, P. C. Dorrestein, Z. Takats, F. Alexandrov.
Benchmark datasets for 3D MALDI- and DESI-imaging mass spectrometry.
GigaScience, 4, 2015. - H. Thiele, S. Heldmann, D. Trede, J. Strehlow, S. Wirtz, W. Dreher, J. Berger, J. Oetjen, J. H. Kobarg, B. Fischer, P. Maaß.
2D and 3D MALDI-Imaging: Conceptual Strategies for Visualization and Data Mining.
BBA - Proteins and Proteomics, 1844(1):117-137, 2014. - J. H. Kobarg, P. Maaß, J. Oetjen, O. Tropp, E. Hirsch, C. Sagiv, M. Goldabaee, P. Vandergheynst.
Numerical experiments with MALDI Imaging data.
Advances in Computational Mathematics, 40(3):667-682, 2014. - J. Oetjen, M. Aichler, D. Trede, J. Strehlow, J. Berger, S. Heldmann, M. Becker, M. Gottschalk, J. H. Kobarg, S. Wirtz, S. Schiffler, H. Thiele, A. Walch, P. Maaß, F. Alexandrov.
MRI-compatible pipeline for three-dimensional MALDI imaging mass spectrometry using PAXgene fixation .
Journal of Proteomics, 90:52-60, 2013. - D. Trede, S. Schiffler, M. Becker, S. Wirtz, K. Steinhorst, J. Strehlow, M. Aichler, J. H. Kobarg, J. Oetjen, A. Dyatlov, S. Heldmann, A. Walch, H. Thiele, P. Maaß, F. Alexandrov.
Exploring Three-Dimensional Matrix-Assisted Laser Desorption/Ionization Imaging Mass Spectrometry Data: Three-Dimensional Spatial Segmentation of Mouse Kidney.
Analytical Chemistry, 84(14):6079-6087, 2012.DOI: 10.1021/ac300673y
- D. Trede, J. H. Kobarg, J. Oetjen, H. Thiele, P. Maaß, F. Alexandrov.
On the Importance of Mathematical Methods for Analysis of MALDI-Imaging Mass Spectrometry Data.
Journal of Integrative Bioinformatics, 9(1), 189 S., 2012.DOI: 10.2390/biecoll-jib-2012-189
online unter: JIB open access - F. Alexandrov, J. H. Kobarg.
Efficient spatial segmentation of large imaging mass spectrometry datasets with spatially aware clustering.
Bioinformatics, 27(13):i230-i238, 2011. - F. Alexandrov, S. Meding, D. Trede, J. H. Kobarg, B. Balluff, A. Walch, H. Thiele, P. Maaß.
Super-resolution segmentation of imaging mass spectrometry data: Solving the issue of low lateral resolution.
Journal of Proteomics, 75(1):237-245, Elsevier, 2011.
Qualifikationsarbeiten (1)
- J. H. Kobarg.
Signal and image processing methods for imaging mass spectrometry data.
Dissertationsschrift, Universität Bremen, 2014.online unter: http://nbn-resolving.de/urn:nbn:de:gbv:46-00104098-10
Tagungsbeiträge (2)
- T. Boskamp, D. Lachmund, J. Oetjen, Y. Hernandez-Cordero, J. Behrmann, J. H. Kobarg, R. Casadonte, J. Kriegsmann, P. Maaß.
Visualizing MALDI TOF datasets of FFPE tissue samples for the purpose of quality assessment and comparison.
OurCon IV - 2016, 17.10.-21.10.2016, Ustron, Polen.
online unter: http://www.bioradint.eu/ourcon_public/papersview.php?showdetail=&paper_id=45
- D. Trede, J. H. Kobarg, K. Steinhorst, F. Alexandrov.
Mathematical Methods for Imaging Mass Spectrometry.
14th Joint International IMEKO TC1+TC7+TC13 Symposium, 31.08.-02.09.2011, Jena, Deutschland.Best Paper Award at IMEKO Symposium Jena
online unter: URN: urn:nbn:de:gbv:ilm1-2011imeko-082:8