Publikationen von Dr. Dennis Trede
Buchkapitel (2)
- G. J. Bauer, D. Lorenz, P. Maaß, H. Preckel, D. Trede.
Compounds, Drugs and Mathematical Image Processing.
Production Factor Mathematics, M. Grötschel, K. Lucas, V. Mehrmann (Hrsg.), S. 379-392, Springer Verlag, 2010. - G. J. Bauer, D. Lorenz, P. Maaß, H. Preckel, D. Trede.
Wirkstoffe, Medikamente und mathematische Bildverarbeitung.
Produktionsfaktor Mathematik - wie Mathematik Technik und Wirtschaft bewegt, M. Grötschel, K. Lucas, V. Mehrmann (Hrsg.), acatech DISKUTIERT, S. 461-477, acatech - Deutsche Akademie der Technikwissenschaften, 2008.
Zeitschriftenartikel (20)
- Y. Cordero Hernandez, T. Boskamp, R. Casadonte, L. Hauberg-Lotte, J. Oetjen, D. Lachmund, A. Peter, D. Trede, K. Kriegsmann, M. Kriegsmann, J. Kriegsmann, P. Maaß.
Targeted Feature Extraction in MALDI Mass Spectrometry Imaging to Discriminate Proteomic Profiles of Breast and Ovarian Cancer.
Proteomics - Clinical Applications, 1700168 , Wiley, 2018. - T. Boskamp, D. Lachmund, J. Oetjen, Y. Hernandez-Cordero, D. Trede, P. Maaß, R. Casadonte, J. Kriegsmann, A. Warth, H. Dienemann, W. Weichert, M. Kriegsmann.
A new classification method for MALDI imaging mass spectrometry data acquired on formalin-fixed paraffin-embedded tissue samples.
BBA - Proteins and Proteomics, , 2016. - F. Hoffmann, J. M. Lotz, J. Lotz, S. Heldmann, D. Trede, J. Oetjen, M. Becker, G. Ernst, P. Maaß, F. Alexandrov, O. Guntinas-Lichius, H. Thiele, F. von Eggeling.
Integration of 3D multimodal imaging data of a head and neck cancer and advanced feature recognition.
BBA - Proteins and Proteomics, , 2016. - J. Oetjen, K. Veselkov, J. Watrous, J. McKenzie, M. Becker, L. Hauberg-Lotte, J. H. Kobarg, A. K. Mróz, N. Strittmatter, F. Hoffmann, D. Trede, A. Palmer, S. Schiffler, K. Steinhorst, M. Aichler, R. Goldin, O. Guntinas-Lichius, F. von Eggeling, H. Thiele, K. Mädler, A. Walch, P. Maaß, P. C. Dorrestein, Z. Takats, F. Alexandrov.
Benchmark datasets for 3D MALDI- and DESI-imaging mass spectrometry.
GigaScience, 4, 2015. - C. Bockelmann, H. Schepker, A. Dekorsy, A. Bartels, D. Trede, K. Kazimierski.
C-Curve: A Finite Alphabet based Parameter Choice Rule for Elastic-Net in Sporadic Communication.
IEEE Communication Letters, 18(8):1443 -- 1446, 2014. - H. Thiele, S. Heldmann, D. Trede, J. Strehlow, S. Wirtz, W. Dreher, J. Berger, J. Oetjen, J. H. Kobarg, B. Fischer, P. Maaß.
2D and 3D MALDI-Imaging: Conceptual Strategies for Visualization and Data Mining.
BBA - Proteins and Proteomics, 1844(1):117-137, 2014. - G. Ernst, O. Guntinas-Lichius, L. Hauberg-Lotte, D. Trede, M. Becker, F. Alexandrov, F. von Eggeling.
Histomolecular interpretation of pleomorphic adenomas of the salivary gland by matrix-assisted laser desorption ionization imaging and spatial segmentation.
Head & Neck, 37(7), 2014.DOI: 10.1002/hed.23713
- O. Klein, K. Strohschein, G. Nebrich, J. Oetjen, D. Trede, H. Thiele, F. Alexandrov, P. Giavalisco, G. N. Duda, P. Roth von, S. Geissler, J. Klose, T. Winkler.
MALDI imaging mass spectrometry: Discrimination of pathophysiological regions in traumatized skeletal muscle by characteristic peptide signatures.
Proteomics, 14(20):2249-2260, 2014. - E. Herrholz, D. Lorenz, G. Teschke, D. Trede.
Sparsity and Compressed Sensing in Inverse Problems.
Lecture Notes in Computational Science and Engineering, 102:365-379, Springer Verlag, 2014. - A. Bartels, P. Dülk, D. Trede, F. Alexandrov, P. Maaß.
Compressed sensing in imaging mass spectrometry.
Inverse Problems, 29(12), 125015 (24pp), IOPscience, 2013.Selected as one of the highlights among all articles published in IOP "Inverse Problems" in 2013.
- S. Steurer, C. Borkowski, S. Odinga, M. Buchholz, C. Koop, H. Huland, M. Becker, M. Witt, D. Trede, M. Omidi, O. Kraus, A. S. Bahar, A. S. Seddiqi, J. M. Singer, M. Kwiatkowski, M. Trusch, R. Simon, M. Wurlitzer, S. Minner, T. Schlomm, G. Sauter, H. Schlüter.
MALDI mass spectrometric imaging based identification of clinically relevant signals in prostate cancer using large-scale tissue microarrays.
Erscheint in International Journal of CancerDOI: 10.1002/ijc.28080
- J. Oetjen, M. Aichler, D. Trede, J. Strehlow, J. Berger, S. Heldmann, M. Becker, M. Gottschalk, J. H. Kobarg, S. Wirtz, S. Schiffler, H. Thiele, A. Walch, P. Maaß, F. Alexandrov.
MRI-compatible pipeline for three-dimensional MALDI imaging mass spectrometry using PAXgene fixation .
Journal of Proteomics, 90:52-60, 2013. - D. Trede, S. Schiffler, M. Becker, S. Wirtz, K. Steinhorst, J. Strehlow, M. Aichler, J. H. Kobarg, J. Oetjen, A. Dyatlov, S. Heldmann, A. Walch, H. Thiele, P. Maaß, F. Alexandrov.
Exploring Three-Dimensional Matrix-Assisted Laser Desorption/Ionization Imaging Mass Spectrometry Data: Three-Dimensional Spatial Segmentation of Mouse Kidney.
Analytical Chemistry, 84(14):6079-6087, 2012.DOI: 10.1021/ac300673y
- D. Trede, F. Alexandrov, C. Sagiv, P. Maaß.
Magnification of Label Maps with a Topology-Preserving Level-Set Method.
IEEE Transactions on Image Processing, 21(9):4040-4053 , 2012. - D. Trede, J. H. Kobarg, J. Oetjen, H. Thiele, P. Maaß, F. Alexandrov.
On the Importance of Mathematical Methods for Analysis of MALDI-Imaging Mass Spectrometry Data.
Journal of Integrative Bioinformatics, 9(1), 189 S., 2012.DOI: 10.2390/biecoll-jib-2012-189
online unter: JIB open access - D. Lorenz, S. Schiffler, D. Trede.
Beyond convergence rates: exact recovery with the Tikhonov regularization with sparsity constraints.
Inverse Problems, 27(8), 085009(17pp), IOPscience, 2011.Paper selected in "2011 Highlights for Inverse Problems"
DOI: 10.1088/0266-5611/27/8/085009
online unter: arXiv.org e-Print archive - F. Alexandrov, S. Meding, D. Trede, J. H. Kobarg, B. Balluff, A. Walch, H. Thiele, P. Maaß.
Super-resolution segmentation of imaging mass spectrometry data: Solving the issue of low lateral resolution.
Journal of Proteomics, 75(1):237-245, Elsevier, 2011. - L. Denis, D. Lorenz, D. Trede.
Greedy Solution of Ill-Posed Problems: Error Bounds and Exact Inversion.
Inverse Problems, 25(11), 115017(24pp), 2009.DOI: 10.1088/0266-5611/25/11/115017
online unter: arXiv.org e-Print archive - L. Denis, D. Lorenz, E. Thiébaut, C. Fournier, D. Trede.
Inline hologram reconstruction with sparsity constraints.
Optics Letters, 34(22):3475-3477, 2009.DOI: 10.1364/OL.34.003475
online unter: HAL (Hyper Articles en Ligne) open archive - D. Lorenz, D. Trede.
Optimal Convergence Rates for Tikhonov Regularization in Besov Scales.
Inverse Problems, 24(5), 055010(14pp), 2008.DOI: 10.1088/0266-5611/24/5/055010
online unter: arXiv.org e-Print archive
Qualifikationsarbeiten (2)
- D. Trede.
Inverse problems with sparsity constraints: Convergence rates and exact recovery.
Dissertationsschrift, Universität Bremen, Logos Verlag, 2010. - D. Trede.
Parameteroptimierung und Segmentieren mit aktiven Konturen für die High-Content-Analyse beim Hochdurchsatz-Screening.
Diplomarbeit, Universität Bremen, unpublished diploma thesis, 2007.
Tagungsbeiträge (7)
- A. Bartels, D. Trede, F. Alexandrov, P. Maaß.
Hybrid Regularization and Sparse Reconstruction of Imaging Mass Spectrometry Data.
10th International Conference on Sampling Theory and Applications (SampTA'13), 01.07.-05.07.2013, Bremen, Deutschland.
online unter: http://www.eurasip.org/Proceedings/Ext/SampTA2013/papers/p189-bartels.pdf
- D. Trede.
Exact support recovery for linear inverse problems with sparsity constraint.
International Conference on Inverse Problems , 26.04.-29,04.2010, Wuhan, China.
Methods and Applications of Analysis, 18(1):105-110, International Press, Boston, Massachusetts, USA, 2011.online unter: http://www.intlpress.com/MAA/MAA-v18.php#MAA-18-1
- D. Trede, J. H. Kobarg, K. Steinhorst, F. Alexandrov.
Mathematical Methods for Imaging Mass Spectrometry.
14th Joint International IMEKO TC1+TC7+TC13 Symposium, 31.08.-02.09.2011, Jena, Deutschland.Best Paper Award at IMEKO Symposium Jena
online unter: URN: urn:nbn:de:gbv:ilm1-2011imeko-082:8
- D. Lorenz, D. Trede.
Greedy Deconvolution of Point-like Objects.
Second Workshop "Signal Processing with Adaptive Sparse Structured Representations" (SPARS′09), 06.04.-09.04.2009, St. Malo, Frankreich.
- D. Lorenz, D. Trede.
Optimal Convergence Rates for Tikhonov Regularization in Besov Scales.
4th International Conference on Inverse Problems: Modeling and Simulation, 26.05.-30.05.2008, Fethiye, Türkei.
Journal of Inverse and Ill-Posed Problems, 17(1):69-76, 2009. - D. Lorenz, P. Maaß, H. Preckel, D. Trede.
Topology-preserving geodesic active contours for segmentation of high-content fluorescent cellular imaging.
79th Annual Meeting of the International Association of Applied Mathematics and Mechanics, 31.03-04.04.2008, Bremen, Deutschland.
Proceedings in Applied Mathematics and Mechanics, 8(1):10941-10942, 2008. - G. Teschke, U. Görsdorf, P. Körner, D. Trede.
A New Approach for Target Classification of Ka-Band Radar Data.
Fourth European Conference on Radar in Meteorology and Hydrology (ERAD), 18.09-22.09.2006, Barcelona, Spanien.