% This file was created by ZeTeM Website
 
% Tobias Boskamp




@INBOOK{Maass2022_7d8eb,
  author = {Peter Maaß and Lena Hauberg-Lotte and Tobias Boskamp},
  chapter = {MALDI Imaging: Exploring the Molecular Landscape},
  title = {German Success Stories in Industrial Mathematics},
  editor = {H.G. Bock and KH. Küfer and Peter Maaß and A. Milde and V. Schulz},
  series = {Mathematics in Industry},
  pages = {97-103},
  publisher = {Springer Verlag},
  year = {2022},
  doi = {10.1007/978-3-030-81455-7_17}
}


@INBOOK{Maass1997_b16a8,
  author = {Peter Maaß and Tobias Boskamp and Volker Dicken and R. Bischoff and H. Peters and H.-G. Stark},
  chapter = {Bilddatenkompression mit Wavelet-Methoden},
  title = {Mathematik: Schlüsseltechnologie für die Zukunft, Verbundprojekte zwischen Universität und Industrie},
  editor = {Franz Hoffmann and W. Jäger and B. Lohmann and H. Schunck},
  pages = {385-394},
  publisher = {Springer Verlag},
  year = {1997}
}


@ARTICLE{Janssen2022_1cd15,
  author = {Charlotte Janßen and Tobias Boskamp and Lena Hauberg-Lotte and Jens Behrmann and Sören Deininger and Mark Kriegsmann and Katharina Kriegsmann and Georg Steinbuß and Hauke Winter and Thomas Muley and Rita Casadonte and Jörg Kriegsmann and Peter Maaß},
  title = {Robust subtyping of non-small cell lung cancer whole sections through MALDI mass spectrometry imaging},
  journal = {Proteomics - Clinical Applications},
  annote = {PRCA2208},
  year = {2022},
  doi = {10.1002/prca.202100068}
}


@ARTICLE{Boskamp2021_cdd0d,
  author = {Tobias Boskamp and Rita Casadonte and Lena Hauberg-Lotte and Sören Deininger and Jörg Kriegsmann and Bolko Maass},
  title = {Cross-Normalization of MALDI Mass Spectrometry Imaging Data Improves Site-to-Site Reproducibility},
  journal = {Analytical Chemistry},
  volume = {93},
  number = {30},
  pages = {10584-10592},
  year = {2021}
}


@ARTICLE{LeClercArrastia2021_a476c,
  author = {Jean Le Clerc Arrastia and Nick Heilenkötter and Daniel Otero Baguer and Lena Hauberg-Lotte and Tobias Boskamp and Sonja Hetzer and Nicole Duschner  and Jörg Schaller  and Peter Maaß},
  title = {Deeply Supervised UNet for Semantic Segmentation to Assist Dermatopathological Assessment of Basal Cell Carcinoma},
  journal = {MDPI Journal of Imaging},
  annote = {71},
  volume = {7},
  number = {4},
  publisher = {Meisenbach Verlag, Bamberg},
  year = {2021},
  doi = {10.3390/jimaging7040071}
}


@ARTICLE{Klein2020_9d2b7,
  author = {Oliver Klein and Franz Fogt and Stephan Hollerbach and Grit Nebrich and Tobias Boskamp and Axel Wellmann},
  title = {Classification of Inflammatory Bowel Disease from Formalin‐Fixed, Paraffin‐Embedded Tissue Biopsies via Imaging Mass Spectrometry},
  journal = {Proteomics - Clinical Applications},
  annote = {190131},
  publisher = {Wiley},
  year = {2020},
  doi = {10.1002/prca.201900131}
}


@ARTICLE{Lieb2020_08933,
  author = {Florian Lieb and Tobias Boskamp and H.-G. Stark},
  title = {Peak detection for MALDI mass spectrometry imaging data using sparse frame multipliers},
  journal = {Journal of Proteomics},
  annote = {103852},
  volume = {225},
  publisher = {Elsevier},
  year = {2020},
  doi = {10.1016/j.jprot.2020.103852}
}


@ARTICLE{Boskamp2020_9cd3d,
  author = {Tobias Boskamp and Delf Lachmund and Rita Casadonte and Lena Hauberg-Lotte and Jan Hendrik Kobarg and Jörg Kriegsmann and Peter Maaß},
  title = {Using the chemical noise background in MALDI mass spectrometry imaging for mass alignment and calibration},
  journal = {Analytical Chemistry},
  volume = {92},
  number = {1},
  pages = {1301-1308},
  year = {2020},
  doi = {10.1021/acs.analchem.9b04473}
}


@ARTICLE{Behrmann2018_05f85,
  author = {Jens Behrmann and Christian Etmann and Tobias Boskamp and Rita Casadonte and Jörg Kriegsmann and Peter Maaß},
  title = {Deep Learning for Tumor Classification in Imaging Mass Spectrometry},
  journal = {Bioinformatics},
  volume = {34},
  number = {7},
  pages = {1215-1223},
  publisher = {Oxford University Press},
  year = {2018},
  doi = {10.1093/bioinformatics/btx724}
}


@ARTICLE{Leuschner2018_e5a4f,
  author = {Johannes Leuschner and Maximilian Schmidt and Pascal Fernsel and Delf Lachmund and Tobias Boskamp and Peter Maaß},
  title = {Supervised Non-negative Matrix Factorization Methods for MALDI Imaging Applications},
  journal = {Bioinformatics},
  annote = {bty909},
  year = {2018},
  doi = {10.1093/bioinformatics/bty909}
}


@ARTICLE{CorderoHernandez2018_28ab2,
  author = {Yovany Cordero Hernandez and Tobias Boskamp and Rita Casadonte and Lena Hauberg-Lotte and Janina Oetjen and Delf Lachmund and Annette Peter and Dennis Trede and Katharina Kriegsmann and Mark Kriegsmann and Jörg Kriegsmann and Peter Maaß},
  title = {Targeted Feature Extraction in MALDI Mass Spectrometry Imaging to Discriminate Proteomic Profiles of Breast and Ovarian Cancer},
  journal = {Proteomics - Clinical Applications},
  annote = {1700168},
  publisher = {Wiley},
  year = {2018},
  doi = {10.1002/prca.201700168}
}


@ARTICLE{Boskamp2016_cf0fc,
  author = {Tobias Boskamp and Delf Lachmund and Janina Oetjen and Yovany Hernandez-Cordero and Dennis Trede and Peter Maaß and Rita Casadonte and Jörg Kriegsmann and Arne Warth and Hendrik Dienemann and Wilko Weichert and Mark Kriegsmann},
  title = {A new classification method for MALDI imaging mass spectrometry data acquired on formalin-fixed paraffin-embedded tissue samples},
  journal = {BBA - Proteins and Proteomics},
  year = {2016},
  doi = {10.1016/j.bbapap.2016.11.003}
}


@ARTICLE{Oetjen2016_9e620,
  author = {Janina Oetjen and Delf Lachmund and Andrew Palmer and Fedor Alexandrov and Michael Becker and Tobias Boskamp and Peter Maaß},
  title = {An approach to optimize sample preparation for MALDI imaging MS of FFPE sections using fractional factorial design of experiments.},
  journal = {Analytical and Bioanalytical Chemistry},
  volume = {408},
  number = {24},
  pages = {6729-40},
  year = {2016},
  doi = {10.1007/s00216-016-9793-4}
}


@ARTICLE{Ricke1998_918ca,
  author = {J. Ricke and Peter Maaß and E. L. Hänninen and T. Liebig and H. Amthauer and C. Stroszczynski and W. Schauer and Tobias Boskamp and M. Wolf},
  title = {Wavelet Versus JPEG (Joint Photographic Expert Group) and Fractal Compression: Impact on the Detection of Low-Contrast Details in Computed Radiographs},
  journal = {Investigative Radiology},
  volume = {33},
  number = {8},
  pages = {456-463},
  year = {1998}
}





@CONFERENCE{Boskamp2016_1be92,
  author = {Tobias Boskamp and Delf Lachmund and Janina Oetjen and Yovany Hernandez-Cordero and Jens Behrmann and Jan Hendrik Kobarg and Rita Casadonte and Jörg Kriegsmann and Peter Maaß},
  title = {Visualizing MALDI TOF datasets of FFPE tissue samples for the purpose of quality assessment and comparison},
  booktitle = {OurCon IV - 2016, 17.10.-21.10.2016, Ustron, Polen},
  year = {2016}
}