% This file was created by ZeTeM Website
 
% Jan Hendrik Kobarg




@INBOOK{Kobarg2013_2efd7,
  author = {Jan Hendrik Kobarg and Fedor Alexandrov},
  chapter = {Efficient spatial segmentation of hyper-spectral 3D volume data},
  title = {Algorithms from and for Nature and Life},
  editor = {Berthold Lausen and Dirk Van den Poel and Alfred Ultsch},
  series = {Studies in Classification, Data Analysis, and Knowledge Organization},
  pages = {95-103},
  publisher = {Springer Verlag},
  year = {2013},
  doi = {10.1007/978-3-319-00035-0_9}
}


@ARTICLE{Boskamp2020_9cd3d,
  author = {Tobias Boskamp and Delf Lachmund and Rita Casadonte and Lena Hauberg-Lotte and Jan Hendrik Kobarg and Jörg Kriegsmann and Peter Maaß},
  title = {Using the chemical noise background in MALDI mass spectrometry imaging for mass alignment and calibration},
  journal = {Analytical Chemistry},
  volume = {92},
  number = {1},
  pages = {1301-1308},
  year = {2020},
  doi = {10.1021/acs.analchem.9b04473}
}


@ARTICLE{Devaux2016_36f87,
  author = {Stephanie Devaux and Dasa Cizkova and Jusal Quanico and Julien Franck and Serge Nataf and Laurent Pays and Lena Hauberg-Lotte and Peter Maaß and Jan Hendrik Kobarg and Firas Kobeissy and Céline Mériaux and M. Wisztorski and Lucia Slovinska and Juraj Blasko and Viera Cigankova and I. Fournier and M. Salzet},
  title = {Proteomic Analysis of the Spatio-temporal Based Molecular Kinetics of Acute Spinal Cord Injury Identifies a Time- and Segment-specific Window for Effectife Tissue Repair},
  journal = {Molecular & Cellular Proteomics},
  volume = {15},
  pages = {2641-2670},
  year = {2016},
  doi = {10.1074/mcp.M115.057794}
}


@ARTICLE{Oetjen2015_84bd2,
  author = {Janina Oetjen and Kirill Veselkov and J. Watrous and James McKenzie and Michael Becker and Lena Hauberg-Lotte and Jan Hendrik Kobarg and Anna K Mróz and Nicole Strittmatter and Franziska Hoffmann and Dennis Trede and Andrew Palmer and Stefan Schiffler and Klaus Steinhorst and Michaela Aichler and Robert Goldin and Orlando Guntinas-Lichius and Ferdinand von Eggeling and Herbert Thiele and Kathrin Mädler and Axel Walch and Peter Maaß and P. C. Dorrestein and Zoltan Takats and Fedor Alexandrov},
  title = {Benchmark datasets for 3D MALDI- and DESI-imaging mass spectrometry},
  journal = {GigaScience},
  volume = {4},
  year = {2015},
  doi = {10.1186/s13742-015-0059-4}
}


@ARTICLE{Thiele2014_aa7f9,
  author = {Herbert Thiele and Stefan Heldmann and Dennis Trede and Jan Strehlow and Stefan Wirtz and Wolfgang Dreher and Judith Berger and Janina Oetjen and Jan Hendrik Kobarg and Bernd Fischer and Peter Maaß},
  title = {2D and 3D MALDI-Imaging: Conceptual Strategies for Visualization and Data Mining},
  journal = {BBA - Proteins and Proteomics},
  volume = {1844},
  number = {1},
  pages = {117-137},
  year = {2014},
  doi = {10.1016/j.bbapap.2013.01.040}
}


@ARTICLE{Kobarg2014_0491d,
  author = {Jan Hendrik Kobarg and Peter Maaß and Janina Oetjen and Oren Tropp and Eyal Hirsch and C. Sagiv and Mohammad Goldabaee and Pierre Vandergheynst},
  title = {Numerical experiments with MALDI Imaging data},
  journal = {Advances in Computational Mathematics},
  volume = {40},
  number = {3},
  pages = {667-682},
  year = {2014},
  doi = {10.1007/s10444-013-9325-0}
}


@ARTICLE{Oetjen2013_a318f,
  author = {Janina Oetjen and Michaela Aichler and Dennis Trede and Jan Strehlow and Judith Berger and Stefan Heldmann and Michael Becker and Michael Gottschalk and Jan Hendrik Kobarg and Stefan Wirtz and Stefan Schiffler and Herbert Thiele and Axel Walch and Peter Maaß and Fedor Alexandrov},
  title = {MRI-compatible pipeline for three-dimensional MALDI imaging mass spectrometry using PAXgene fixation },
  journal = {Journal of Proteomics},
  volume = {90},
  pages = {52-60},
  year = {2013},
  doi = {10.1016/j.jprot.2013.03.013}
}


@ARTICLE{Trede2012_bc30b,
  author = {Dennis Trede and Stefan Schiffler and Michael Becker and Stefan Wirtz and Klaus Steinhorst and Jan Strehlow and Michaela Aichler and Jan Hendrik Kobarg and Janina Oetjen and Andrey Dyatlov and Stefan Heldmann and Axel Walch and Herbert Thiele and Peter Maaß and Fedor Alexandrov},
  title = {Exploring Three-Dimensional Matrix-Assisted Laser Desorption/Ionization Imaging Mass Spectrometry Data: Three-Dimensional Spatial Segmentation of Mouse Kidney},
  journal = {Analytical Chemistry},
  volume = {84},
  number = {14},
  pages = {6079-6087},
  year = {2012},
  doi = {10.1021/ac300673y}
}


@ARTICLE{Trede2012_b5c57,
  author = {Dennis Trede and Jan Hendrik Kobarg and Janina Oetjen and Herbert Thiele and Peter Maaß and Fedor Alexandrov},
  title = {On the Importance of Mathematical Methods for Analysis of MALDI-Imaging Mass Spectrometry Data},
  journal = {Journal of Integrative Bioinformatics},
  volume = {9},
  number = {1},
  pages = {189},
  year = {2012},
  doi = {10.2390/biecoll-jib-2012-189}
}


@ARTICLE{Alexandrov2011_8318d,
  author = {Fedor Alexandrov and Jan Hendrik Kobarg},
  title = {Efficient spatial segmentation of large imaging mass spectrometry datasets with spatially aware clustering},
  journal = {Bioinformatics},
  volume = {27},
  number = {13},
  pages = {i230-i238},
  year = {2011},
  doi = {10.1093/bioinformatics/btr246}
}


@ARTICLE{Alexandrov2011_4a149,
  author = {Fedor Alexandrov and Stephan Meding and Dennis Trede and Jan Hendrik Kobarg and Benjamin Balluff and Axel Walch and Herbert Thiele and Peter Maaß},
  title = {Super-resolution segmentation of imaging mass spectrometry data: Solving the issue of low lateral resolution},
  journal = {Journal of Proteomics},
  volume = {75},
  number = {1},
  pages = {237-245},
  publisher = {Elsevier},
  year = {2011},
  doi = {10.1016/j.jprot.2011.08.002}
}


@PHDTHESIS{Kobarg2014_2ecff,
  author = {Jan Hendrik Kobarg},
  title = {Signal and image processing methods for imaging mass spectrometry data},
  school = {Universität Bremen},
  year = {2014}
}


@CONFERENCE{Boskamp2016_1be92,
  author = {Tobias Boskamp and Delf Lachmund and Janina Oetjen and Yovany Hernandez-Cordero and Jens Behrmann and Jan Hendrik Kobarg and Rita Casadonte and Jörg Kriegsmann and Peter Maaß},
  title = {Visualizing MALDI TOF datasets of FFPE tissue samples for the purpose of quality assessment and comparison},
  booktitle = {OurCon IV - 2016, 17.10.-21.10.2016, Ustron, Polen},
  year = {2016}
}


@CONFERENCE{Trede2011_410a2,
  author = {Dennis Trede and Jan Hendrik Kobarg and Klaus Steinhorst and Fedor Alexandrov},
  title = {Mathematical Methods for Imaging Mass Spectrometry},
  booktitle = {14th Joint International IMEKO TC1+TC7+TC13 Symposium, 31.08.-02.09.2011, Jena, Deutschland},
  year = {2011}
}