% This file was created by ZeTeM Website
 
% Herbert Thiele




@INBOOK{Dahlke2008_cceec,
  author = {Stephan Dahlke and Peter Maaß and Gerd Teschke and K. Koch and Dirk Lorenz and S. Müller and Stefan Schiffler and A. Stämpfli and Herbert Thiele and M. Werner},
  chapter = {Multiscale Approximation},
  title = {Mathematical Methods in Time Series Analysis and Digital Image Processing},
  editor = {R. Dahlhaus and J. Kurths and Peter Maaß and J. Timmer},
  pages = {75-109},
  publisher = {Springer Verlag},
  year = {2008}
}


@ARTICLE{Hoffmann2016_f4a5a,
  author = {Franziska Hoffmann and Judith M. Lotz and Johannes Lotz and Stefan Heldmann and Dennis Trede and Janina Oetjen and Michael Becker and Günther Ernst and Peter Maaß and Fedor Alexandrov and Orlando Guntinas-Lichius and Herbert Thiele and Ferdinand von Eggeling},
  title = {Integration of 3D multimodal imaging data of a head and neck cancer and advanced feature recognition},
  journal = {BBA - Proteins and Proteomics},
  year = {2016},
  doi = {10.1016/j.bbapap.2016.08.018}
}


@ARTICLE{Oetjen2015_84bd2,
  author = {Janina Oetjen and Kirill Veselkov and J. Watrous and James McKenzie and Michael Becker and Lena Hauberg-Lotte and Jan Hendrik Kobarg and Anna K Mróz and Nicole Strittmatter and Franziska Hoffmann and Dennis Trede and Andrew Palmer and Stefan Schiffler and Klaus Steinhorst and Michaela Aichler and Robert Goldin and Orlando Guntinas-Lichius and Ferdinand von Eggeling and Herbert Thiele and Kathrin Mädler and Axel Walch and Peter Maaß and P. C. Dorrestein and Zoltan Takats and Fedor Alexandrov},
  title = {Benchmark datasets for 3D MALDI- and DESI-imaging mass spectrometry},
  journal = {GigaScience},
  volume = {4},
  year = {2015},
  doi = {10.1186/s13742-015-0059-4}
}


@ARTICLE{Thiele2014_aa7f9,
  author = {Herbert Thiele and Stefan Heldmann and Dennis Trede and Jan Strehlow and Stefan Wirtz and Wolfgang Dreher and Judith Berger and Janina Oetjen and Jan Hendrik Kobarg and Bernd Fischer and Peter Maaß},
  title = {2D and 3D MALDI-Imaging: Conceptual Strategies for Visualization and Data Mining},
  journal = {BBA - Proteins and Proteomics},
  volume = {1844},
  number = {1},
  pages = {117-137},
  year = {2014},
  doi = {10.1016/j.bbapap.2013.01.040}
}


@ARTICLE{Klein2014_6beb4,
  author = {Oliver Klein and Kristin Strohschein and Grit Nebrich and Janina Oetjen and Dennis Trede and Herbert Thiele and Fedor Alexandrov and Patrick Giavalisco and Georg N. Duda and Philipp Roth von and Sven Geissler and Joachim Klose and Tobias Winkler},
  title = {MALDI imaging mass spectrometry: Discrimination of pathophysiological regions in traumatized skeletal muscle by characteristic peptide signatures},
  journal = {Proteomics},
  volume = {14},
  number = {20},
  pages = {2249-2260},
  year = {2014},
  doi = {10.1002/pmic.201400088}
}


@ARTICLE{Oetjen2013_a318f,
  author = {Janina Oetjen and Michaela Aichler and Dennis Trede and Jan Strehlow and Judith Berger and Stefan Heldmann and Michael Becker and Michael Gottschalk and Jan Hendrik Kobarg and Stefan Wirtz and Stefan Schiffler and Herbert Thiele and Axel Walch and Peter Maaß and Fedor Alexandrov},
  title = {MRI-compatible pipeline for three-dimensional MALDI imaging mass spectrometry using PAXgene fixation },
  journal = {Journal of Proteomics},
  volume = {90},
  pages = {52-60},
  year = {2013},
  doi = {10.1016/j.jprot.2013.03.013}
}


@ARTICLE{Lagarrigue2012_d356d,
  author = {Mélanie Lagarrigue and Fedor Alexandrov and Gabriel Dieuset and Aline Perrin and Régis Lavigne and Stéphanie Baulac and Herbert Thiele and Benoit Martin},
  title = {A new analysis workflow for MALDI imaging mass spectrometry: application to the discovery and identification of potential markers of Childhood Absence Epilepsy},
  journal = {Journal of Proteome Research},
  volume = {11},
  number = {11},
  pages = {5453-5463},
  year = {2012},
  doi = {10.1021/pr3006974}
}


@ARTICLE{Trede2012_bc30b,
  author = {Dennis Trede and Stefan Schiffler and Michael Becker and Stefan Wirtz and Klaus Steinhorst and Jan Strehlow and Michaela Aichler and Jan Hendrik Kobarg and Janina Oetjen and Andrey Dyatlov and Stefan Heldmann and Axel Walch and Herbert Thiele and Peter Maaß and Fedor Alexandrov},
  title = {Exploring Three-Dimensional Matrix-Assisted Laser Desorption/Ionization Imaging Mass Spectrometry Data: Three-Dimensional Spatial Segmentation of Mouse Kidney},
  journal = {Analytical Chemistry},
  volume = {84},
  number = {14},
  pages = {6079-6087},
  year = {2012},
  doi = {10.1021/ac300673y}
}


@ARTICLE{Trede2012_b5c57,
  author = {Dennis Trede and Jan Hendrik Kobarg and Janina Oetjen and Herbert Thiele and Peter Maaß and Fedor Alexandrov},
  title = {On the Importance of Mathematical Methods for Analysis of MALDI-Imaging Mass Spectrometry Data},
  journal = {Journal of Integrative Bioinformatics},
  volume = {9},
  number = {1},
  pages = {189},
  year = {2012},
  doi = {10.2390/biecoll-jib-2012-189}
}


@ARTICLE{Komori2011_4ce12,
  author = {M. Komori and Y. Matsuyama and T. Nirasawa and Herbert Thiele and Michael Becker and Fedor Alexandrov and T. Saida and M. Tanaka and H. Matsuo and H. Tomimoto and R. Takahashi and K. Tashiro and M. Ikegawa and T. Kondo},
  title = {Proteomic pattern analysis discriminates among multiple sclerosis-related disorders},
  journal = {Annals of Neurology},
  volume = {71},
  number = {5},
  pages = {614-623},
  year = {2011},
  doi = {10.1002/ana.22633}
}


@ARTICLE{Alexandrov2011_4a149,
  author = {Fedor Alexandrov and Stephan Meding and Dennis Trede and Jan Hendrik Kobarg and Benjamin Balluff and Axel Walch and Herbert Thiele and Peter Maaß},
  title = {Super-resolution segmentation of imaging mass spectrometry data: Solving the issue of low lateral resolution},
  journal = {Journal of Proteomics},
  volume = {75},
  number = {1},
  pages = {237-245},
  publisher = {Elsevier},
  year = {2011},
  doi = {10.1016/j.jprot.2011.08.002}
}


@ARTICLE{Alexandrov2010_68534,
  author = {Fedor Alexandrov and Michael Becker and Sören Deininger and Günther Ernst and Liane Wehder and Markus Grasmair and Ferdinand von Eggeling and Herbert Thiele and Peter Maaß},
  title = {Spatial segmentation of imaging mass spectrometry data with edge-preserving image denoising and clustering},
  journal = {Journal of Proteome Research},
  volume = {9},
  number = {12},
  pages = {6535-6546},
  year = {2010},
  doi = {10.1021/pr100734z}
}


@ARTICLE{Balog2010_dd984,
  author = {C. I. Balog and Fedor Alexandrov and R. J. Derks and P. J. Hensbergen and G. J. van Dam and E. M. Tukahebwa and N. B. Kabatereine and Herbert Thiele and B. J. Vennervald and O. A. Mayboroda and A. M. Deelder},
  title = {The feasibility of mass spectrometry and advanced data processing for monitoring Schistosoma mansoni infection},
  journal = {Proteomics - Clinical Applications},
  volume = {4},
  number = {5},
  pages = {499-510},
  year = {2010}
}


@ARTICLE{Alexandrov2009_51e1e,
  author = {Fedor Alexandrov and J. Decker and B. Mertens and A. M. Deelder and Herbert Thiele and Peter Maaß and R. A. E. M. Tollenaar},
  title = {Biomarker discovery in MALDI-TOF serum protein profiles using discrete wavelet transformation},
  journal = {Bioinformatics},
  volume = {25},
  number = {5},
  pages = {643-649},
  year = {2009},
  doi = {10.1093/bioinformatics/btn662}
}


@ARTICLE{Lindemann2009_0387b,
  author = {Mathias Lindemann and Herbert Thiele and Peter Maaß and J. Decker},
  title = {Support vector classification of proteomic profile spectra based on feature extraction with the bi-orthogonal discrete wavelet transform},
  journal = {Computing and Visualization in Science},
  volume = {12},
  number = {4},
  pages = {189-199},
  publisher = {Springer Verlag},
  year = {2009},
  doi = {10.1007/s00791-008-0087-z}
}


@ARTICLE{Klann2007_ddeaa,
  author = {Esther Klann and Dirk Lorenz and Peter Maaß and Herbert Thiele},
  title = {Shrinkage versus Deconvolution},
  journal = {Inverse Problems},
  volume = {23},
  pages = {2231-2248},
  year = {2007},
  doi = {10.1088/0266-5611/23/5/025}
}





@CONFERENCE{Bredies2008_6f4aa,
  author = {Kristian Bredies and Fedor Alexandrov and J. Decker and Dirk Lorenz and Herbert Thiele},
  title = {Sparse deconvolution for peak picking and ion charge estimation in mass spectrometry},
  booktitle = {15th European Conference on Mathematics in Industry'08, 30.06.-04.07.2008, London, Großbritannien},
  year = {2008}
}