% This file was created by ZeTeM Website
 
% Dennis Trede




@INBOOK{Bauer2010_52cc7,
  author = {G. J. Bauer and Dirk Lorenz and Peter Maaß and H. Preckel and Dennis Trede},
  chapter = {Compounds, Drugs and Mathematical Image Processing},
  title = {Production Factor Mathematics},
  editor = {M. Grötschel and K. Lucas and Volker Mehrmann},
  pages = {379-392},
  publisher = {Springer Verlag},
  year = {2010},
  doi = {10.1007/978-3-642-11248-5_20}
}


@INBOOK{Bauer2008_f1be5,
  author = {G. J. Bauer and Dirk Lorenz and Peter Maaß and H. Preckel and Dennis Trede},
  chapter = {Wirkstoffe, Medikamente und mathematische Bildverarbeitung},
  title = {Produktionsfaktor Mathematik - wie Mathematik Technik und Wirtschaft bewegt},
  editor = {M. Grötschel and K. Lucas and Volker Mehrmann},
  series = {acatech DISKUTIERT},
  pages = {461-477},
  publisher = {acatech - Deutsche Akademie der Technikwissenschaften},
  year = {2008},
  doi = {10.1007/978-3-540-89435-3_20}
}


@ARTICLE{CorderoHernandez2018_28ab2,
  author = {Yovany Cordero Hernandez and Tobias Boskamp and Rita Casadonte and Lena Hauberg-Lotte and Janina Oetjen and Delf Lachmund and Annette Peter and Dennis Trede and Katharina Kriegsmann and Mark Kriegsmann and Jörg Kriegsmann and Peter Maaß},
  title = {Targeted Feature Extraction in MALDI Mass Spectrometry Imaging to Discriminate Proteomic Profiles of Breast and Ovarian Cancer},
  journal = {Proteomics - Clinical Applications},
  annote = {1700168},
  publisher = {Wiley},
  year = {2018},
  doi = {10.1002/prca.201700168}
}


@ARTICLE{Boskamp2016_cf0fc,
  author = {Tobias Boskamp and Delf Lachmund and Janina Oetjen and Yovany Hernandez-Cordero and Dennis Trede and Peter Maaß and Rita Casadonte and Jörg Kriegsmann and Arne Warth and Hendrik Dienemann and Wilko Weichert and Mark Kriegsmann},
  title = {A new classification method for MALDI imaging mass spectrometry data acquired on formalin-fixed paraffin-embedded tissue samples},
  journal = {BBA - Proteins and Proteomics},
  year = {2016},
  doi = {10.1016/j.bbapap.2016.11.003}
}


@ARTICLE{Hoffmann2016_f4a5a,
  author = {Franziska Hoffmann and Judith M. Lotz and Johannes Lotz and Stefan Heldmann and Dennis Trede and Janina Oetjen and Michael Becker and Günther Ernst and Peter Maaß and Fedor Alexandrov and Orlando Guntinas-Lichius and Herbert Thiele and Ferdinand von Eggeling},
  title = {Integration of 3D multimodal imaging data of a head and neck cancer and advanced feature recognition},
  journal = {BBA - Proteins and Proteomics},
  year = {2016},
  doi = {10.1016/j.bbapap.2016.08.018}
}


@ARTICLE{Oetjen2015_84bd2,
  author = {Janina Oetjen and Kirill Veselkov and J. Watrous and James McKenzie and Michael Becker and Lena Hauberg-Lotte and Jan Hendrik Kobarg and Anna K Mróz and Nicole Strittmatter and Franziska Hoffmann and Dennis Trede and Andrew Palmer and Stefan Schiffler and Klaus Steinhorst and Michaela Aichler and Robert Goldin and Orlando Guntinas-Lichius and Ferdinand von Eggeling and Herbert Thiele and Kathrin Mädler and Axel Walch and Peter Maaß and P. C. Dorrestein and Zoltan Takats and Fedor Alexandrov},
  title = {Benchmark datasets for 3D MALDI- and DESI-imaging mass spectrometry},
  journal = {GigaScience},
  volume = {4},
  year = {2015},
  doi = {10.1186/s13742-015-0059-4}
}


@ARTICLE{Bockelmann2014_6a78f,
  author = {Carsten Bockelmann and Henning Schepker and Armin Dekorsy and Andreas Bartels and Dennis Trede and Kamil Kazimierski},
  title = { C-Curve: A Finite Alphabet based Parameter Choice Rule for Elastic-Net in Sporadic Communication},
  journal = {IEEE Communication Letters},
  volume = {18},
  number = {8},
  pages = {1443 -- 1446},
  year = {2014},
  doi = {10.1109/LCOMM.2014.2329487}
}


@ARTICLE{Thiele2014_aa7f9,
  author = {Herbert Thiele and Stefan Heldmann and Dennis Trede and Jan Strehlow and Stefan Wirtz and Wolfgang Dreher and Judith Berger and Janina Oetjen and Jan Hendrik Kobarg and Bernd Fischer and Peter Maaß},
  title = {2D and 3D MALDI-Imaging: Conceptual Strategies for Visualization and Data Mining},
  journal = {BBA - Proteins and Proteomics},
  volume = {1844},
  number = {1},
  pages = {117-137},
  year = {2014},
  doi = {10.1016/j.bbapap.2013.01.040}
}


@ARTICLE{Ernst2014_29aec,
  author = {Günther Ernst and Orlando Guntinas-Lichius and Lena Hauberg-Lotte and Dennis Trede and Michael Becker and Fedor Alexandrov and Ferdinand von Eggeling},
  title = {Histomolecular interpretation of pleomorphic adenomas of the salivary gland by matrix-assisted laser desorption ionization imaging and spatial segmentation},
  journal = {Head & Neck},
  volume = {37},
  number = {7},
  year = {2014},
  doi = {10.1002/hed.23713}
}


@ARTICLE{Klein2014_6beb4,
  author = {Oliver Klein and Kristin Strohschein and Grit Nebrich and Janina Oetjen and Dennis Trede and Herbert Thiele and Fedor Alexandrov and Patrick Giavalisco and Georg N. Duda and Philipp Roth von and Sven Geissler and Joachim Klose and Tobias Winkler},
  title = {MALDI imaging mass spectrometry: Discrimination of pathophysiological regions in traumatized skeletal muscle by characteristic peptide signatures},
  journal = {Proteomics},
  volume = {14},
  number = {20},
  pages = {2249-2260},
  year = {2014},
  doi = {10.1002/pmic.201400088}
}


@ARTICLE{Herrholz2014_ce67c,
  author = {Evelyn Herrholz and Dirk Lorenz and Gerd Teschke and Dennis Trede},
  title = {Sparsity and Compressed Sensing in Inverse Problems},
  journal = {Lecture Notes in Computational Science and Engineering},
  volume = {102},
  pages = {365-379},
  publisher = {Springer Verlag},
  year = {2014},
  doi = {10.1007/978-3-319-08159-5_18}
}


@ARTICLE{Bartels2013_67421,
  author = {Andreas Bartels and Patrick Dülk and Dennis Trede and Fedor Alexandrov and Peter Maaß},
  title = {Compressed sensing in imaging mass spectrometry},
  journal = {Inverse Problems},
  volume = {29},
  number = {12},
  pages = {125015 (24pp)},
  publisher = {IOPscience},
  year = {2013},
  doi = {10.1088/0266-5611/29/12/125015}
}

 
@UNPUBLISHED{Steurer2013_cc1eb,
  author = {Stefan Steurer and Carina Borkowski and Sinje Odinga and Malte Buchholz and Christina Koop and Hartwig Huland and Michael Becker and Matthias Witt and Dennis Trede and Maryam Omidi and Olga Kraus and Ahmad S. Bahar and A. Shoaib Seddiqi and Julius M. Singer and Marcel Kwiatkowski and Maria Trusch and Ronald Simon and Marcus Wurlitzer and Sarah Minner and Thorsten Schlomm and Guido Sauter and Hartmut Schlüter},
  title = {MALDI mass spectrometric imaging based identification of clinically relevant signals in prostate cancer using large-scale tissue microarrays},
  journal = {International Journal of Cancer},
  doi = {10.1002/ijc.28080}
}


@ARTICLE{Oetjen2013_a318f,
  author = {Janina Oetjen and Michaela Aichler and Dennis Trede and Jan Strehlow and Judith Berger and Stefan Heldmann and Michael Becker and Michael Gottschalk and Jan Hendrik Kobarg and Stefan Wirtz and Stefan Schiffler and Herbert Thiele and Axel Walch and Peter Maaß and Fedor Alexandrov},
  title = {MRI-compatible pipeline for three-dimensional MALDI imaging mass spectrometry using PAXgene fixation },
  journal = {Journal of Proteomics},
  volume = {90},
  pages = {52-60},
  year = {2013},
  doi = {10.1016/j.jprot.2013.03.013}
}


@ARTICLE{Trede2012_bc30b,
  author = {Dennis Trede and Stefan Schiffler and Michael Becker and Stefan Wirtz and Klaus Steinhorst and Jan Strehlow and Michaela Aichler and Jan Hendrik Kobarg and Janina Oetjen and Andrey Dyatlov and Stefan Heldmann and Axel Walch and Herbert Thiele and Peter Maaß and Fedor Alexandrov},
  title = {Exploring Three-Dimensional Matrix-Assisted Laser Desorption/Ionization Imaging Mass Spectrometry Data: Three-Dimensional Spatial Segmentation of Mouse Kidney},
  journal = {Analytical Chemistry},
  volume = {84},
  number = {14},
  pages = {6079-6087},
  year = {2012},
  doi = {10.1021/ac300673y}
}


@ARTICLE{Trede2012_d7ace,
  author = {Dennis Trede and Fedor Alexandrov and C. Sagiv and Peter Maaß},
  title = {Magnification of Label Maps with a Topology-Preserving Level-Set Method.},
  journal = {IEEE Transactions on Image Processing},
  volume = {21},
  number = {9},
  pages = {4040-4053 },
  year = {2012},
  doi = {10.1109/TIP.2012.2199325}
}


@ARTICLE{Trede2012_b5c57,
  author = {Dennis Trede and Jan Hendrik Kobarg and Janina Oetjen and Herbert Thiele and Peter Maaß and Fedor Alexandrov},
  title = {On the Importance of Mathematical Methods for Analysis of MALDI-Imaging Mass Spectrometry Data},
  journal = {Journal of Integrative Bioinformatics},
  volume = {9},
  number = {1},
  pages = {189},
  year = {2012},
  doi = {10.2390/biecoll-jib-2012-189}
}


@ARTICLE{Lorenz2011_89320,
  author = {Dirk Lorenz and Stefan Schiffler and Dennis Trede},
  title = {Beyond convergence rates: exact recovery with the Tikhonov regularization with sparsity constraints},
  journal = {Inverse Problems},
  volume = {27},
  number = {8},
  pages = {085009(17pp)},
  publisher = {IOPscience},
  year = {2011},
  doi = {10.1088/0266-5611/27/8/085009}
}


@ARTICLE{Alexandrov2011_4a149,
  author = {Fedor Alexandrov and Stephan Meding and Dennis Trede and Jan Hendrik Kobarg and Benjamin Balluff and Axel Walch and Herbert Thiele and Peter Maaß},
  title = {Super-resolution segmentation of imaging mass spectrometry data: Solving the issue of low lateral resolution},
  journal = {Journal of Proteomics},
  volume = {75},
  number = {1},
  pages = {237-245},
  publisher = {Elsevier},
  year = {2011},
  doi = {10.1016/j.jprot.2011.08.002}
}


@ARTICLE{Denis2009_8f2c9,
  author = {Loïc Denis and Dirk Lorenz and Dennis Trede},
  title = {Greedy Solution of Ill-Posed Problems: Error Bounds and Exact Inversion},
  journal = {Inverse Problems},
  volume = {25},
  number = {11},
  pages = {115017(24pp)},
  year = {2009},
  doi = {10.1088/0266-5611/25/11/115017}
}


@ARTICLE{Denis2009_81e56,
  author = {Loïc Denis and Dirk Lorenz and Eric Thiébaut and Corinne Fournier and Dennis Trede},
  title = {Inline hologram reconstruction with sparsity constraints},
  journal = {Optics Letters},
  volume = {34},
  number = {22},
  pages = {3475-3477},
  year = {2009},
  doi = {10.1364/OL.34.003475}
}


@ARTICLE{Lorenz2008_11b45,
  author = {Dirk Lorenz and Dennis Trede},
  title = {Optimal Convergence Rates for Tikhonov Regularization in Besov Scales},
  journal = {Inverse Problems},
  volume = {24},
  number = {5},
  pages = {055010(14pp)},
  year = {2008},
  doi = {10.1088/0266-5611/24/5/055010}
}


@PHDTHESIS{Trede2010_c1fb9,
  author = {Dennis Trede},
  title = {Inverse problems with sparsity constraints: Convergence rates and exact recovery},
  school = {Universität Bremen},
  publisher = {Logos Verlag},
  year = {2010}
}


@PHDTHESIS{Trede2007_2d29c,
  author = {Dennis Trede},
  title = {Parameteroptimierung und Segmentieren mit aktiven Konturen für die High-Content-Analyse beim Hochdurchsatz-Screening.},
  school = {Universität Bremen},
  publisher = {unpublished diploma thesis},
  year = {2007}
}


@CONFERENCE{Bartels2013_08f28,
  author = {Andreas Bartels and Dennis Trede and Fedor Alexandrov and Peter Maaß},
  title = {Hybrid Regularization and Sparse Reconstruction of Imaging Mass Spectrometry Data},
  booktitle = {10th International Conference on Sampling Theory and Applications (SampTA'13), 01.07.-05.07.2013, Bremen, Deutschland},
  pages = {189-192},
  year = {2013}
}


@CONFERENCE{Trede2011_e8ff9,
  author = {Dennis Trede},
  title = {Exact support recovery for linear inverse problems with sparsity constraint},
  booktitle = {International Conference on Inverse Problems , 26.04.-29,04.2010, Wuhan, China},
  volume = {18},
  number = {1},
  pages = {105-110},
  year = {2011}
}


@CONFERENCE{Trede2011_410a2,
  author = {Dennis Trede and Jan Hendrik Kobarg and Klaus Steinhorst and Fedor Alexandrov},
  title = {Mathematical Methods for Imaging Mass Spectrometry},
  booktitle = {14th Joint International IMEKO TC1+TC7+TC13 Symposium, 31.08.-02.09.2011, Jena, Deutschland},
  year = {2011}
}


@CONFERENCE{Lorenz2009_f08f2,
  author = {Dirk Lorenz and Dennis Trede},
  title = {Greedy Deconvolution of Point-like Objects},
  booktitle = {Second Workshop "Signal Processing with Adaptive Sparse Structured Representations" (SPARS′09), 06.04.-09.04.2009, St. Malo, Frankreich},
  year = {2009}
}


@CONFERENCE{Lorenz2009_11b45,
  author = {Dirk Lorenz and Dennis Trede},
  title = {Optimal Convergence Rates for Tikhonov Regularization in Besov Scales},
  booktitle = {4th International Conference on Inverse Problems: Modeling and Simulation, 26.05.-30.05.2008, Fethiye, Türkei},
  volume = {17},
  number = {1},
  pages = {69-76},
  year = {2009},
  doi = {10.1515/JIIP.2009.008}
}


@CONFERENCE{Lorenz2008_701eb,
  author = {Dirk Lorenz and Peter Maaß and H. Preckel and Dennis Trede},
  title = {Topology-preserving geodesic active contours for segmentation of high-content fluorescent cellular imaging},
  booktitle = {79th Annual Meeting of the International Association of Applied Mathematics and Mechanics, 31.03-04.04.2008, Bremen, Deutschland},
  volume = {8},
  number = {1},
  pages = {10941-10942},
  year = {2008},
  doi = {10.1002/pamm.200810941}
}


@CONFERENCE{Teschke2006_8393a,
  author = {Gerd Teschke and Ulrich Görsdorf and Philipp Körner and Dennis Trede},
  title = {A New Approach for Target Classification of Ka-Band Radar Data},
  booktitle = {Fourth European Conference on Radar in Meteorology and Hydrology (ERAD), 18.09-22.09.2006, Barcelona, Spanien},
  year = {2006}
}